Maize diversity panel

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August undefined, 2024

WebAssociation mapping is a powerful approach for exploring the molecular basis of phenotypic variations in plants. A maize (Zea mays L.) association mapping panel including 527 inbred lines with tropical, subtropical and temperate backgrounds, representing the global maize diversity, was genotyped using 1,536 single nucleotide polymorphisms (SNPs). WebSep 26, 2024 · PDF Intact transposable elements (TEs) account for 65% of the maize genome and can impact gene function and regulation. ... A sub set o f 50 9 lines fro m …

Panzea - maize-diversity

WebJul 17, 2024 · The diversity panel used in this study consisted of 513 global diverse maize inbred lines (AM513), originating from CIMMYT, China and USA, and representing tropical, subtropical and temperate germplasm. The AM513 panel has been described in detail in previous studies ( Yang et al., 2011, 2014 ). WebJan 27, 2024 · Maize (Zea maysssp. mays) populations exhibit vast ranges of genetic and phenotypic diversity. As sequencing costs have declined, an increasing number of … laboratorium dekat rshs

Maize 282 Diversity Panel — burnt-rosemary 1.0-alpha …

WebThese data sets include maize HapMapV1 and V2, MaizeSNP50 Bead Chip (aka 55K SNP array) genotypes for our "maize 282" association panel, and the 1144 traditional SNPs … About us . We are a group of scientists who worked on an NSF-funded project called … Phenotypes - Data maize-diversity Genotypes - Data maize-diversity Panzea Publications from 1999 - now. Springer NM, Anderson SN, Andorf CM, … The Panzea project was funded by a National Science Foundation Plant … For researchers . See our Data page for datasets snd genotype search tools.. All … Education and Outreach - Data maize-diversity Contact Us - Data maize-diversity The Panzea (Maize Diversity) project has generated a set of 5000 RILs grouped … Glossary - Data maize-diversity Webtitle = "Mapping responsive genomic elements to heat stress in a maize diversity panel", abstract = "Background: Many plant species exhibit genetic variation for coping with environmental stress. However, there are still limited approaches to effectively uncover the genomic region that regulates distinct responsive patterns of the gene across ... WebMar 30, 2024 · At present, native Mexican maize landraces represent 59 of the 219 maize races designated and characterized in Latin America (Sanchez et al. 2000 ), forming two … jeanine tramuto

Embracing diversity: a genetic marker dataset with increased …

Genetic basis of resistance to southern corn leaf blight in the …

WebNov 7, 2024 · Phenotypic responses to heat stress within a maize diversity panel. a Genotypic variants segregated 102 genotypes (including 5 flint/popcorn, 9 iodent, 9 … WebNov 7, 2024 · Mapping responsive genomic elements to heat stress in a maize diversity panel Mapping responsive genomic elements to heat stress in a maize diversity panel … jeanine toscano netcong njWebMay 9, 2016 · Plant materials and field trials. A maize diversity panel comprising 274 inbred lines was used for this GWAS. The 274 lines (Supplementary File S1) were drawn from a well-characterized association mapping panel of 279 inbred lines (here termed the diversity panel) representing the global diversity of maize available in the public sector … jeanine treep

"WebMay 1, 2024 · The maize core diversity panel, sometimes referred as the “Goodman” association panel (Flint-Garcia et al. 2005; Zila et al. 2013) was used in this work. … " - Maize diversity panel

Maize diversity panel

Assessment of two statistical approaches for variance genome …

WebMar 30, 2024 · Maize ( Zea mays L.) is a multi-purpose row crop grown worldwide, which overtime has often been bred for increased yield at the detriment of lower composition grain quality. Some knowledge of the... WebAlthough TEs comprise the majority of the maize genome and affect important phenotypes, genome-wide patterns of TE polymorphisms in maize have only been studied in a …

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WebCurrently, I am working on sorghum and maize quantitative genetics, genomics, and genotype by environment interactions. In the future, I would like to extend my research and breeding efforts to the commercial utility of various millet crops. ... Quantitative resistance loci to southern rust mapped in a temperate maize diversity panel. WebGenetic control of kernel compositional variation in a maize diversity panel Authors Jonathan S Renk 1 , Amanda M Gilbert 1 , Travis J Hattery 2 , Christine H O'Connor 1 3 , …

WebApr 9, 2024 · HIGHLIGHTS. who: Zhikai Liang from the Department of Plant and Microbial, USA have published the paper: Mapping responsive genomic elements to heat stress in a maize diversity panel, in the Journal: (JOURNAL) what: Even though reGenes and heo-eGenes identified from the approach showed variable responsiveness between … WebMar 3, 2024 · A set of 752 maize genotypes drawn from the set of 942 genotypes included in the Wisconsin Diversity Panel ( Mazaheri et al. 2024) as well as integrated checks were planted in two independently replicated blocks at the Havelock Farm research facility of the University of Nebraska-Lincoln on 6 May 2024 (40.852 N, 96.616 W).

WebMaize 282 Diversity Panel — burnt-rosemary 1.0-alpha documentation Maize 282 Diversity Panel¶ uploaded: 9999-12-31 Description todo Known Files¶ .012¶ Contains a … WebNov 20, 2015 · To better understand the genetic architecture controlling maize SAM morphology, we used GWAS to identify loci correlated with SAM microphenotypes within …

WebNov 21, 2024 · Plot of -log10(P-values) of SNPs from the logistic mixed model (Y-axis) against those from the unified mixed linear model (X-axis) for the genome-wide association study conducted for maize ear height in the Goodman diversity panel dichotomized at …

WebThe maize core diversity panel, sometimes referred to as the “Goodman” association panel (Flint-Garcia et al. 2005; Zila et al. 2013), is a collection of 302 inbred lines capturing much of the maize diversity present in public breeding programs worldwide. This population is composed of current and historically important lines originating ... jeanine torp brantingWebJan 27, 2024 · A specific goal of this effort was to provide a high-density genome-wide set of markers for the Wisconsin Diversity Panel. In order to accomplish this goal, we included resequencing data of lower depth for 144 members of the Wisconsin Diversity Panel that were resequenced as part of maize HapMap3 (Bukowski et al., 2024). In addition, to ... jeanine toesWebJul 6, 2024 · The Intergovernmental Panel on Climate Change (IPCC) defines climate change vulnerability as “the ... in the Occitanie region—Tarn, Tarn et Garonne, Gers and Haute-Garonne —to ensure that we included a diversity of maize farming systems in southwestern France. Access to irrigation differs between the departments, as does soil … jeanine tonduWebA-maize-ing Diversity This copy is for your personal, non-commercial use only. ... Genetic Reference Panel ( 13), and the Arabi-dopsis 1001 Genomes Project ( 14) projects as jeanine toscanoWebApr 14, 2016 · Given trendtoward increased use SNPmarkers, twotypes sameset modelcrop plant, maize. recentstudy, Jones et al. [19] collected data 80SSRs 187SNPs sameset 58inbred maize lines representing maizediversity derived from temperate Northern Flint SouthernDent landraces. technicaladvantages SNPsover SSRs dataquality, … jeanine trippWebFeb 5, 2015 · The maize diversity panel (composed of 302 inbred lines) represents much of the diversity available in public breeding sector around the world. A subset of the … jeanine tremblayWebMar 1, 2011 · The panel offers deep replication of most Midwest dent alleles. There is a lesser representation of tropical alleles relative to other association panels but includes … jeanine trapani